INTERNATIONAL EDITIONS

[2]
Current Trends in Cellular Automata and Automata Networks
E. Formenti, S. Sené & G. Theyssier
Natural Computing, volume 22, issue 3, 2023
official link, preprint link, bibtex

[1]
Automata Networks and Their Applications
E. Formenti & S. Sené
Natural Computing, volume 19, issue 1, 2020
official link, preprint link, bibtex

INTERNATIONAL BOOK CHAPTERS

[2]
Boolean networks and their dynamics: the impact of updates
L. Paulevé & S. Sené
Systems biology modelling and analysis: formal bioinformatics methods and tools, 173-250, 2022
lien officiel, lien preprint, bibtex

[1]
On Boolean automata isolated cycles and tangential double-cycles dynamics
J. Demongeot, T. Melliti, M. Noual, D. Regnault S. Sené
Automata and complexity, Springer Series on Emergence, Complexity, Computation, 42:145-178, Springer, 2022.
lien officiel, lien preprint, bibtex

INTERNATIONAL JOURNALS

[15]
On Representation of gene regulation networks by hypothesis logic based Boolean systems
P. Siegel, A. Doncescu, V. Risch & S. Sené
Journal of Supercomputing, 79:4556-4581, 2023
lien officiel, lien preprint, bibtex

[14]
On Boolean automata networks (de)composition
K. Perrot, P. Perrotin & S. Sené
Fundamenta Informaticae, 181:163-188, 2021
official link, preprint link, bibtex

[13]
Attractor landscapes in Boolean networks with firing memory
E. Goles, F. Lobos, G. A. Ruz & S. Sené
Natural Computing, 19:295-319, 2020
official link, preprint link, bibtex

[12]
About block-parallel Boolean networks: a position paper
J. Demongeot & S. Sené
Natural Computing, 19:5-13, 2020
official link, preprint link, bibtex

[11]
Phase transitions in stochastic non-linear threshold Boolean automata networks on ZxZ: the boundary impact
J. Demongeot & S. Sené
Advances in Applied Mathematics, 98:77-99, 2018
official link, preprint link, bibtex

[10]
Synchronism vs asynchronism in monotonic Boolean automata networks
M. Noual & S. Sené
Natural Computing, 17:393-402, 2018
official link, preprint link, bibtex

[9]
About non-monotony in Boolean automata networks
M. Noual, D. Regnault & S. Sené
Theoretical Computer Science, 504: 12-25, 2013
official link, preprint link, bibtex

[8]
Combinatorics of Boolean automata circuits dynamics
J. Demongeot, M. Noual & S. Sené
Discrete Applied Mathematics, 160(4-5): 398-415, 2012
official link, preprint link, bibtex

[7]
"Immunetworks", intersecting circuits and dynamics
J. Demongeot, A. Elena, M. Noual, S. Sené & F. Thuderoz
Journal of Theoretical Biology, 280(1): 16-33, 2011
official link, preprint link, bibtex

[6]
Attraction basins as gauges of the robustness against boundary conditions in biological complex systems
J. Demongeot, E. Goles, M. Morvan, M. Noual & S. Sené
PLoS One, 5(8): e11793, 2010
official link (open acces), bibtex

[5]
Micro-RNAs: viral genome and robustness of gene expression in the host
J. Demongeot, E. Drouet, A. Elena, A. Moreira, Y. Rechoum & S. Sené
Philosophical Transactions of the Royal Society A, 367: 4941-4965, 2009
official link, preprint link, bibtex

[4]
Robustness in regulatory interaction networks. A generic approach with applications at different levels: physiologic, metabolic and genetic
J. Demongeot, H. Ben Amor, A. Elena, P. Gillois, M. Noual & S. Sené
International Journal of Molecular Sciences, 10(10): 4437-4473, 2009
official link (open access), bibtex

[3]
Boundary conditions and phase transitions in neural networks. Theoretical results
J. Demongeot, C. Jézéquel & S. Sené
Neural Networks, 21(7): 971-979, 2008
official link, preprint link, bibtex

[2]
Boundary conditions and phase transitions in neural networks. Simulation results
J. Demongeot & S. Sené
Neural Networks, 21(7): 962-970, 2008
official link, preprint link, bibtex

[1]
Robustness in regulatory networks: a multi-disciplinary approach
J. Demongeot, A. Elena & S. Sené
Acta Biotheoretica, 56(1-2): 27-49, 2008
official link, preprint link, bibtex

INTERNATIONAL COMMUNICATIONS WITH PROCEEDINGS AND SELECTION COMMITTEE

[31]
Dynamical stability of threshold networks over undirected signed graphs
E. Goles, P. Montealegre, M. Ríos-Wilson & S. Sené
Submitted, 2024
lien preprint, bibtex

[30]
Complexity of Boolean automata networks under block-parallel update modes
K. Perrot, S. Sené & L. Tapin
Accepted at SAND'2024, 2024
preprint link, bibtex

[29]
Asymptotic (a)synchronism sensitivity and complexity of elementary cellular automata
I. Donoso Leiva, E. Goles, M. Ríos-Wilson & S. Sené
LATIN 2024 Proceedings, LNCS 14579, 272-286, Springer, 2024
official link, preprint link, bibtex

[28]
Combinatorics of block-parallel automata networks
K. Perrot, S. Sené & Léah Tapin
SOFSEM 2024 Proceedings, LNCS 14519, 442-455, Springer, 2024
offcial link, preprint link, bibtex

[27]
Turning block-sequential automata networks into smaller parallel networks with isomorphic limit dynamics
P. Perrotin & S. Sené
CiE 2023 Proceedings, LNCS 13967, 214-228, Springer, 2023
official link, preprint link, bibtex

[26]
Representation of Boolean genetic regulatory networks by hypothesis logic
P. Siegel, A. Doncescu, V. Risch & S. Sené
BIOCOMP 2021 Proceedings, Transactions on Computational Science and Computational Intelligence, Springer. To appear.
official link, preprint link, bibtex

[25]
Non-deterministic updates of Boolean networks
L. Paulevé & S. Sené
AUTOMATA 2021 Proceedings, OASIcs 90, 10:1-10:16, Schloss Dagstuhl Publishing, 2021
official link, preprint link, bibtex

[24]
Optimising attractor computation in Boolean automata networks
K. Perrot, P. Perrotin & S. Sené
LATA 2021 Proceedings, LNCS 12638, 68-80, Springer, 2021
official link, preprint link, bibtex

[23]
Complexity of limit-cycle problems in Boolean networks
F. Bridoux, C. Gaze-Maillot, K. Perrot & S. Sené
SOFSEM 2021 Proceedings, LNCS 12607, 135-146, Springer, 2021
official link, preprint link, bibtex

[22]
On the complexity of acyclic modules in automata networks
K. Perrot, P. Perrotin & S. Sené
TAMC 2020 Proceedings, LNCS 12337, 168-180, Springer, 2020
official link, preprint link, bibtex

[21]
#P-completeness of counting update digraphs, cacti, and series-parallel decomposition method
C. Noûs, K. Perrot, S. Sené & L. Venturini
CiE 2020 Proceedings, LNCS 12098, 326-338, Springer, 2020
official link, preprint link, bibtex

[20]
Towards a Boolean dynamical system representation into a nonmonotonic modal logic
P. Siegel, A. Doncescu, V. Risch & S. Sené
NMR 2018 Proceedings, 53-62, 2018
official link (open access), preprint link, bibtex

[19]
A framework for (de)composing with Boolean automata networks
K. Perrot, P. Perrotin & S. Sené
MCU 2018 Proceedings, LNCS 10881, 121-136, Springer, 2018
official link, preprint link, bibtex

[18]
Reconstruction of Boolean regulatory models of flower development exploiting an evolution strategy
G. Ruz, E. Goles & S. Sené
CEC 2018 Proceedings, 1-8, IEEE Press, 2018
official link, preprint link, bibtex

[17]
On the cost of simulating a parallel Boolean automata network by a block-sequential one
F. Bridoux, P. Guillon, K. Perrot, S. Sené & G. Theyssier
TAMC 2017 Proceedings, LNCS 10185, 112-128, Springer, 2017
official link, preprint link, bibtex

[16]
Asynchronous simulation of Boolean networks by monotone Boolean networks
T. Melliti, D. Regnault, A. Richard & S. Sené
ACRI 2016 Proceedings, LNCS 9863, 182-191, Springer, 2015
official link, preprint link, bibtex

[15]
On the flora of asynchronous locally non-monotonic Boolean automata networks
A. Alcolei, K. Perrot & S. Sené
SASB 2015 Proceedings, ENTCS 326, 3-25, Elsevier, 2016
official link, preprint link, bibtex

[14]
Asynchronous dynamics of Boolean automata double-cycles
T. Melliti, M. Noual, D. Regnault, S. Sené & J. Sobieraj
UCNC 2015 Proceedings, LNCS 9252, 250-262, Springer, 2015
official link, preprint link, bibtex

[13]
On the convergence of Boolean automata networks without negative cycles
T. Melliti, D. Regnault, A. Richard & S. Sené
AUTOMATA 2013 Proceedings, LNCS 8155, 124-138, Springer, 2013
official link, preprint link, bibtex

[12]
Sensitivity to synchronism of Boolean automata networks
M. Noual & S. Sené
Accepted for presentation at CiE 2013
official link, preprint link, bibtex

[11]
Analysis of modular organisation of interaction networks based on asymptotic dynamics
F. Delaplace, H. Klaudel, T. Melliti & S. Sené
CMSB 2012 Proceedings, LNCS 7605, 148-165, Springer, 2012
Accepted for presentation at CiE 2012
official link, preprint link, bibtex

[10]
Boolean networks synchronism sensitivity and XOR circulant networks convergence time
M. Noual, D. Regnault & S. Sené
AUTOMATA & JAC 2012 Full Papers Proceedings, EPTCS 90, 37-52, Open Publishing Association, 2012
official link (open access), bibtex

[9]
A necessary condition for boundary sensitivity of attractive non-linear stochastic cellular automata in ZxZ
S. Sené
AUTOMATA & JAC 2012 Exploratory Papers Proceedings, 1-10, I3S/RR-2012-04-FR, 2012
official link, preprint link, bibtex

[8]
The singular power of the environment on stochastic nonlinear threshold Boolean automata networks
J. Demongeot & S. Sené
CMSB 2011 Proceedings, 55-64, ACM Press, 2011
official link, preprint link, bibtex

[7]
Random Boolean networks and attractors of their intersecting circuits
J. Demongeot, A. Elena, M. Noual & S. Sené
WAINA 2011 Proceedings, 483-487, IEEE Press, 2011
official link, preprint link, bibtex

[6]
On the number of attractors of positive and negative Boolean automata circuits
J. Demongeot, M. Noual & S. Sené
WAINA 2010 Proceedings, 782-789, IEEE Press, 2010
official link, preprint link, bibtex

[5]
Loss of linearity and symmetrisation in regulatory networks
J. Demongeot, E. Goles & S. Sené
WAINA 2009 Proceedings, 908-913, IEEE Press, 2009
official link, preprint link, bibtex

[4]
Structural sensitivity of neural and genetic networks
H. Ben Amor, J. Demongeot & S. Sené
MICAI 2008 Proceedings, LNCS 5317, 973-986, Springer, 2008
official link, preprint link, bibtex

[3]
Robustness of dynamical systems attraction basins against state perturbations: theoretical protocol and application in systems biology
J. Demongeot, M. Morvan & S. Sené
CISIS 2008 Proceedings, 675-681, IEEE Press, 2008
official link, preprint link, bibtex

[2]
Impact of fixed boundary conditions on the basins of attraction in the flower's morphogenesis of Arabidopsis thaliana
J. Demongeot, M. Morvan & S. Sené
AINAW 2008 Proceedings, 782-789, IEEE Press, 2008
official link, preprint link, bibtex

[1]
A distributed trust diffusion protocol for ad hoc networks
M. Morvan & S. Sené
ICWMC 2006 Proceedings, 87-92, IEEE Press, 2006
official link, preprint link, bibtex

NATIONAL EDITIONS

[1]
Automates cellulaires et réseaux d'automates: le rôle central de l'irrégularité
N. Fatès & S. Sené
Technique et Science Informatiques, Lavoisier, vol 34/4, 2015
official link, preprint link, bibtex

NATIONAL BOOK CHAPTERS

[1]
Méthodes informatiques en biologie
G. Barlovatz-Meimon & S. Sené
Culture de cellules animales (3rd ed.), Lavoisier, 2014
official link, preprint link, bibtex

NATIONAL JOURNALS

[2]
Les réseaux d'automates booléens au cœur du calcul naturel
K. Perrot & S. Sené
1024 - Bulletin de la Société informatique de France, 20: 171-182, 2022
lien officiel, lien preprint, bibtex

[1]
Cycles, double-cycles et modes de mise à jour
T. Melliti, M. Noual, D. Regnault & S. Sené
Technique et Science Informatiques, 34: 401-430, 2015
lien officiel, lien preprint, bibtex

NATIONAL COMMUNICATIONS WITH PROCEEDINGS AND SELECTION COMMITTEE

[3]
Modal hypothesis logic, Boolean dynamical systems and genetic networks
P. Siegel, A. Doncescu, V. Risch & S. Sené
JIAF 2020 Proceedings, 43-52, 2020.
official link, preprint link, bibtex

[2]
Représentation des systèmes dynamiques discrets booléens en logique des hypothèses
P. Siegel, A. Doncescu, V. Risch & S. Sené
JIAF 2017 Proceedings, 1-14, 2017
lien officiel (open acces), bibtex

[1]
Fixed boundaries influence in biological networks: from theory to application
J. Demongeot, M. Morvan & S. Sené
JOBIM 2008 Proceedings, 111-116, 2008
official link, preprint link, bibtex

THESES

[3]
Sur la bio-informatique des réseaux d'automates
Habilitation Thesis, Université d'Évry - Val d'Essonne, 2012
lien, bibtex

[2]
Influence des conditions de bord dans les réseaux d'automates booléens à seuil et application à la biologie
Ph.D. Thesis, Université Grenoble 1 - Joseph Fourier, 2008
link, bibtex

[1]
Modèle de diffusion de la confiance pour les réseaux ad hoc
Master Thesis, École normale supérieure de Lyon, 2005
link, bibtex

RESEARCH REPORTS

[4]
Final report for the project ECOS Sud C16E01
S. Sené
link

[3]
Towards a theory of modelling with Boolean automata networks - I. Theorisation and observations
M. Noual & S. Sené
arXiv:1111.2077, 2011
link

[2]
Final report for the project ACI Knowledge authentication ambient (KAA)
S. Galice, V. Legrand, F. Le Mouël, M. Minier, S. Ubéda, M. Morvan, S. Sené, L. Guihery, A. Rabagny, J. Moret-Bailly, J.-P. Neuville, J. Pousin
link

[1]
Le modèle des piles de sable sur une grille bi-dimensionnelle
Master research report, Université Paris 7 - Denis Diderot, 2004
link

POSTERS

[3]
Influence des conditions de bords dans les réseaux biologiques
S. Sené
link

[2]
Instabilités structurelles et analyses temporo-spatiales en biologie
S. Sené
link

[1]
Trudi: a trust diffusion protocol for ad hoc networks
S. Sené
link


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